Bioinformatics

Collections of tools ExPASy
NCBI
Find a protein sequence ExPASy
Amino acid composition PROTPARAM
Isoelectric point  PROTPARAM
Signal sequences PSORT 
Transmembrane helices TMPRED
Blast search ExPASY            
NCBI
Align two sequences LALIGN 
Phylogenetic distribution COG
Multiple sequence alignment CLUSTAL
TCOFFEE
Highlight important residues BOXSHADE
Secondary structure prediction PredictProtein
Tertiary structure prediction phyre
Protein Families PFAM
Domain organisation Interpro
Protein Structure Database PDB
Compare & align two protein structures Dalilite
Patents By keyword 
Restriction map of gene REMAP
Translate DNA to protein ExPASy
Archaeal Genomes Sulfolobus
EMBOSS programme suite  EMBOSS
Oligo properties calculator  OLIGO
String server – gene co-occurences STRING
mfold nucleic acid folding  mfold
Protein disorder prediction  globplot
RONN
Genome Browsers UCSC
metamicrobes
HHpred protein similarity HHpred
CRISPR database CRISPRI

Contact

Tel. +44-1334-463432
Fax +44-1334-462595
email: [email protected]

Biomedical Sciences Research Complex
University of St Andrews
North Haugh
St Andrews, Fife KY16 9ST