Bioinformatics
Collections of tools | ExPASy NCBI |
Find a protein sequence | ExPASy |
Amino acid composition | PROTPARAM |
Isoelectric point | PROTPARAM |
Signal sequences | PSORT |
Transmembrane helices | TMPRED |
Blast search | ExPASY NCBI |
Align two sequences | LALIGN |
Phylogenetic distribution | COG |
Multiple sequence alignment | CLUSTAL TCOFFEE |
Highlight important residues | BOXSHADE |
Secondary structure prediction | PredictProtein |
Tertiary structure prediction | phyre |
Protein Families | PFAM |
Domain organisation | Interpro |
Protein Structure Database | PDB |
Compare & align two protein structures | Dalilite |
Patents | By keyword |
Restriction map of gene | REMAP |
Translate DNA to protein | ExPASy |
Archaeal Genomes | Sulfolobus |
EMBOSS programme suite | EMBOSS |
Oligo properties calculator | OLIGO |
String server – gene co-occurences | STRING |
mfold nucleic acid folding | mfold |
Protein disorder prediction | globplot RONN |
Genome Browsers | UCSC metamicrobes |
HHpred protein similarity | HHpred |
CRISPR database | CRISPRI |